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Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
Ian H McHardy, Maryam Goudarzi, Maomeng Tong, Paul M Ruegger, Emma Schwager, John R Weger, Thomas G Graeber, Justin L Sonnenburg, Steve Horvath, Curtis Huttenhower, Dermot PB McGovern, Albert J Fornace, James Borneman, Jonathan Braun Microbiome 2013, 1:17 (5 June 2013)
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Co-occurrence of anaerobic bacteria in colorectal carcinomas
René L Warren, Douglas J Freeman, Stephen Pleasance, Peter Watson, Richard A Moore, Kyla Cochrane, Emma Allen-Vercoe, Robert A Holt Microbiome 2013, 1:16 (15 May 2013)
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The effects of intestinal microbial community structure on disease manifestation in IL-10-/- mice infected with Helicobacter hepaticus
Nabeetha A Nagalingam, Courtney J Robinson, Ingrid L Bergin, Kathryn A Eaton, Gary B Huffnagle, Vincent B Young Microbiome 2013, 1:15 (10 May 2013)
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From meta-omics to causality: experimental models for human microbiome research
Joëlle V Fritz, Mahesh S Desai, Pranjul Shah, Jochen G Schneider, Paul Wilmes Microbiome 2013, 1:14 (3 May 2013)
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Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants
Ardythe L Morrow, Anne J Lagomarcino, Kurt R Schibler, Diana H Taft, Zhuoteng Yu, Bo Wang, Mekibib Altaye, Michael Wagner, Dirk Gevers, Doyle V Ward, Michael A Kennedy, Curtis Huttenhower, David S Newburg Microbiome 2013, 1:13 (16 April 2013)
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Editor’s summary
Abnormal gut bacteria in premature babies was found days before the onset of necrotizing enterocolitis and could also be determined indirectly from urine, providing a possible biomarker for disease. |
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Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis
Jean M Macklaim, Andrew D Fernandes, Julia M Di Bella, Jo-Anne Hammond, Gregor Reid, Gregory B Gloor Microbiome 2013, 1:12 (12 April 2013)
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A comprehensive evaluation of multicategory classification methods for microbiomic data
Alexander Statnikov, Mikael Henaff, Varun Narendra, Kranti Konganti, Zhiguo Li, Liying Yang, Zhiheng Pei, Martin J Blaser, Constantin F Aliferis, Alexander V Alekseyenko Microbiome 2013, 1:11 (5 April 2013)
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Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis
Vincent B Young, Laura H Raffals, Susan M Huse, Marius Vital, Dongjuan Dai, Patrick D Schloss, Jennifer M Brulc, Dionysios A Antonopoulos, Rose L Arrieta, John H Kwon, K Gautham Reddy, Nathaniel A Hubert, Sharon L Grim, Joseph H Vineis, Sushila Dalal, Hilary G Morrison, A Murat Eren, Folker Meyer, Thomas M Schmidt, James M Tiedje, Eugene B Chang, Mitchell L Sogin Microbiome 2013, 1:9 (4 March 2013)
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A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community
Marius Vital, Christopher R Penton, Qiong Wang, Vincent B Young, Dion A Antonopoulos, Mitchell L Sogin, Hilary G Morrison, Laura Raffals, Eugene B Chang, Gary B Huffnagle, Thomas M Schmidt, James R Cole, James M Tiedje Microbiome 2013, 1:8 (4 March 2013)
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Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform
Erin B Fichot, R Sean Norman Microbiome 2013, 1:10 (4 March 2013)
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Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota
Adam M Nelson, Michael D Elftman, Amelia K Pinto, Megan Baldridge, Patrick Hooper, Justin Kuczynski, Joseph F Petrosino, Vincent B Young, Christiane E Wobus Microbiome 2013, 1:7 (18 February 2013)
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CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota
James Robert White, Cynthia Maddox, Owen White, Samuel V Angiuoli, W Florian Fricke Microbiome 2013, 1:6 (4 February 2013)
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Estimation of viral richness from shotgun metagenomes using a frequency count approach
Heather K Allen, John Bunge, James A Foster, Darrell O Bayles, Thaddeus B Stanton Microbiome 2013, 1:5 (4 February 2013)
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Microbe observation and cultivation array (MOCA) for cultivating and analyzing environmental microbiota
Weimin Gao, Dena Navarroli, Jared Naimark, Weiwen Zhang, Shih-hui Chao, Deirdre R Meldrum Microbiome 2013, 1:4 (9 January 2013)
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A new system to cultivate bacteria is described, which consists of a Petri dish that contains an array of droplets as cultivation chambers and provides a cost-efficient platform for isolation of bacteria from natural environments. |
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Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut
Elaine O Petrof, Gregory B Gloor, Stephen J Vanner, Scott J Weese, David Carter, Michelle C Daigneault, Eric M Brown, Kathleen Schroeter, Emma Allen-Vercoe Microbiome 2013, 1:3 (9 January 2013)
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A super-probiotic synthetic stool, composed of 33 different bacterial strains, was developed and used to treat two patients with severe C. difficile infection. The probiotic bacteria could still be detected up to six months after inoculation. |
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Selecting age-related functional characteristics in the human gut microbiome
Yemin Lan, Andres Kriete, Gail L Rosen Microbiome 2013, 1:2 (9 January 2013)
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Microbiome, demystifying the role of microbial communities in the biosphere
K Eric Wommack, Jacques Ravel Microbiome 2013, 1:1 (9 January 2013)
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